Duke University Computational Biology & Bioinformatics

Directory of CBB Program Faculty

(Alphabetical list of faculty)

The research interests of the faculty span a large segment of modern computational biology and bioinformatics. We organize these (loosely, since many faculty work in multiple areas) inot six areas.

 

Systems Biology

Faculty in this inter-disciplinary area focus on the systematic study of complex interactions in biological systems, integrating and analyzing complex data from multiple experimental sources.  Many are members of the IGSP’s Center for Systems Biology, which has as its central research theme the study of network dynamics across various time scales, including temporal changes in both network state and structure.  Current focus is on a variety of biological systems including: budding yeast, sea urchins, plant roots, worms, and human cell lines.

 

Pankaj Agarwal John Harer Uwe Ohler
Ryan Baugh Alex Hartemink Sridhar Raghavachari
Vikas Bhandawat Edwin Iversen Amy Schmid
Philip Benfey Erich Jarvis Scott Schmidler
Nicholas Buchler Jack D Keene Joshua Socolar
Blanche Capel Paul Magwene Mike West
Raluca Gordan Dave McClay Greg Wray
Steve Haase Sayan Mukherjee Lingchong You

Genome Analysis

Faculty in this area take advantage of the vast amount of data made available through the Human Genome Project and other large-scale sequencing efforts,  applying computational approaches to understand and predict the function of DNA.

 

Greg Crawford David MacAlpine Uwe Ohler
Fred Dietrich Tom Mitchell-Olds Mike West
Raluca Gordan Sayan Mukherjee
Alex Hartemink Mohamed Noor  

Computational Structural Biology

Faculty in this area use computational approaches to help resolve molecular structures of macromolecules and uncover their interactions. Many of these faculty are also part of Duke’s Structural Biology & Biophysics Program.

 

Pankaj Agarwal Homme Hellinga Scott Schmidler
David Beratan Terrence Oas Jingdong Tian
Patrick Charbonneau David Richardson Weitao Yang
Bruce Donald Jane Richardson  

Genomic Medicine

Faculty in this area apply large-scale genomic technologies (transcriptomics, proteomics, metabolomics, genome-wide association studies) to understand and predict human diseases and traits.  Most of these faculty are affiliated with the Medical Center and include physician-scientists, statisticians and population geneticists.

 

Andrew Allen Simon Gregory Joseph Nevins
Cliburn Chan Ahmad Hariri Svati Shah
Jen-Tsan Ashley Chi Elizabeth Hauser Georgia Tomaras
Sandeep Dave Edwin Iversen Mike West
Sheng Feng Joseph Lucas  
David Goldstein David MacAlpine  
Raluca Gordan Sayan Mukherjee

Evolutionary Genomics

Faculty in this area use computational approaches to study how changes in the content and organization of genomes have contributed to the diversity of life on Earth, as well as the processes that have shaped these changes.

 

Katia Koelle Fred Nijhout Marcy Uyenoyama
Paul Magwene Mohamed Noor Jennifer Wernegreen
Tom Mitchell-Olds Allen Rodrigo Greg Wray

Mathematical and Statistical Modeling of Biological Systems

A common theme in the work of many faculty in CBB is the use of Mathematical and Statistical Models to study biological questions.  Areas of application are widespread and include immunology, physiology, metabolic and gene regulatory networks, ecology and population biology and evolutionary biology. 

 

Vikas Bhandawat Tom Mitchell-Olds Scott Schmidler
John Harer Sayan Mukherjee Marcy Uyenoyama
Katia Koelle Fred Nijhout<
Anita Layton Mike Reed