(Alphabetical list of faculty)
The research interests of the faculty span a large segment of modern computational biology and bioinformatics. We organize these (loosely, since many faculty work in multiple areas) inot six areas.
Systems Biology Genome Analysis Genomic Medicine
Faculty in this inter-disciplinary area focus on the systematic study of complex interactions in biological systems, integrating and analyzing complex data from multiple experimental sources. Many are members of the IGSP’s Center for Systems Biology, which has as its central research theme the study of network dynamics across various time scales, including temporal changes in both network state and structure. Current focus is on a variety of biological systems including: budding yeast, sea urchins, plant roots, worms, and human cell lines.
Faculty in this area take advantage of the vast amount of data made available through the Human Genome Project and other large-scale sequencing efforts, applying computational approaches to understand and predict the function of DNA.
| Greg Crawford | David MacAlpine | Uwe Ohler |
| Fred Dietrich | Tom Mitchell-Olds | Mike West |
| Raluca Gordan | Sayan Mukherjee | |
| Alex Hartemink | Mohamed Noor |
Faculty in this area use computational approaches to help resolve molecular structures of macromolecules and uncover their interactions. Many of these faculty are also part of Duke’s Structural Biology & Biophysics Program.
| Pankaj Agarwal | Homme Hellinga | Scott Schmidler |
| David Beratan | Terrence Oas | Jingdong Tian |
| Patrick Charbonneau | David Richardson | Weitao Yang |
| Bruce Donald | Jane Richardson |
Faculty in this area apply large-scale genomic technologies (transcriptomics, proteomics, metabolomics, genome-wide association studies) to understand and predict human diseases and traits. Most of these faculty are affiliated with the Medical Center and include physician-scientists, statisticians and population geneticists.
Faculty in this area use computational approaches to study how changes in the content and organization of genomes have contributed to the diversity of life on Earth, as well as the processes that have shaped these changes.
| Katia Koelle | Fred Nijhout | Marcy Uyenoyama |
| Paul Magwene | Mohamed Noor | Jennifer Wernegreen |
| Tom Mitchell-Olds | Allen Rodrigo | Greg Wray |
A common theme in the work of many faculty in CBB is the use of Mathematical and Statistical Models to study biological questions. Areas of application are widespread and include immunology, physiology, metabolic and gene regulatory networks, ecology and population biology and evolutionary biology.
| Vikas Bhandawat | Tom Mitchell-Olds | Scott Schmidler |
| John Harer | Sayan Mukherjee | Marcy Uyenoyama |
| Katia Koelle | Fred Nijhout< | |
| Anita Layton | Mike Reed |
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