Duke Proteomics Core Facility
PublicationsPublications
Collaborative Publications
Peptide Array X-Linking (PAX): A New Peptide-Protein Identification Approach. Okada H, Uezu A, Soderblom EJ, Moseley MA, Gertler FB, Soderling SH. PLOS One. 2012. May 14; 7(5): e37035.
Metaprotein expression modeling for label-free quantitative proteomics. Lucas JE, Thompson JW, Dubois LG, McCarthy J, Tillmann H, Thompson A, Shire N, Hendrickson R, Dieguez F, Goldman P, Schwarz K, Patel K, McHutchison J, Moseley MA. BMC Bioinformatics. 2012 May 4;13(1):74. PMID: 22559859
The protein expression landscape of the Arabidopsis root. Petricka JJ, Schauer MA, Megraw M, Breakfield NW, Thompson JW, Georgiev S, Soderblom EJ, Ohler U, Moseley MA, Grossniklaus U, Benfey PN. Proc Natl Acad Sci U S A. 2012 Mar 23. PMID: 22447775.
Proteomic Characterization of the Cellular Response to Nitrosative Stress Mediated by S-Nitrosoglutathione Reductase Inhibition. Foster MW, Yang Z, Gooden DM, Thompson JW, Ball C, Turner M, Hou Y, Pi J, Moseley MA, Que M D LG., J Proteome Res. 2012 Mar 5. PMID: 22390303.
Erythrocyte plasma membrane-bound ERK1/2 activation promotes ICAM-4-mediated sickle red cell adhesion to endothelium. Zennadi R, Whalen EJ, Soderblom EJ, Alexander SC, Thompson JW, Dubois LG, Moseley MA, Telen MJ. Blood. 2012 Feb 2;119(5):1217-27. PMID: 22147898.
Analysis of Oxygen/Glucose-Deprivation-Induced Changes in SUMO3 Conjugation Using SILAC-Based Quantitative Proteomics. Wang W, Thompson JW, Wang Z, Sheng H, Foster MW, Moseley MA, Paschen W. J. Proteome Res. 2012 Feb 3; 11(2):1108-17. PMID: 22082260
SH3 domain-based phototrapping in living cells reveals Rho family GAP signaling complexes. Okada H, Uezu A, Mason FM, Soderblom EJ, Moseley MA 3rd, Soderling SH. Sci Signal. 2011 Nov 29;4(201):rs13. PMID: 22126966.
Quantitative proteomics reveals metabolic and pathogenic properties of Chlamydia trachomatis developmental forms. Saka HA, Thompson JW, Chen YS, Kumar Y, Dubois LG, Moseley MA, Valdivia RH. Mol Microbiol. 2011 Dec;82(5):1185-203. PMID: 22126966.
Association of Calcineurin with the COPI Protein Sec28 and the COPII Protein Sec13 Revealed by Quantitative Proteomics. Kozubowski L, Thompson JW, Cardenas ME, Moseley MA, Heitman J. PLoS One. 2011;6(10):e25280. Epub 2011 Oct 3.
A biotin switch-based proteomics approach identifies 14-3-3ζ as a target of sirt1 in the metabolic regulation of caspase-2. Andersen JL, Thompson JW, Lindblom KR, Johnson ES, Yang CS, Lilley LR, Freel CD, Moseley MA, Kornbluth S. Mol Cell. 2011 Sep 2;43(5):834-42.
Staphylococcus aureus sortase A contributes to the Trojan horse mechanism of immune defense evasion with its intrinsic resistance to Cys184 oxidation. Melvin JA, Murphy CF, Dubois LG, Thompson JW, Moseley MA, McCafferty DG. Biochemistry. 2011 Sep 6;50(35):7591-9. Epub 2011 Aug 10.
Characterization of Serum Proteins Associated with IL28B Genotype among Patients with Chronic Hepatitis C. Cyr DD, Lucas JE, Thompson JW, Patel K, Clark PJ, Thompson A, Tillmann HL, McHutchison JG, Moseley MA, McCarthy JJ. PLoS One. 2011;6(7):e21854. Epub 2011 Jul 5.
Quantitative Label-Free Phosphoproteomics Strategy for Multifaceted Experimental Designs.Soderblom EJ, Philipp M, Thompson JW, Caron MG, Moseley MA. Anal Chem. 2011 Apr 22.
High predictive accuracy of an unbiased proteomic profile for sustained virologic response in chronic hepatitis C patients. Patel K, Lucas JE, Thompson JW, Dubois LG, Tillmann HL, Thompson AJ, Uzarski D, Califf RM, Moseley MA, Ginsburg GS, McHutchison JG, McCarthy JJ; for the MURDOCK Horizon 1 Study Team. Hepatology. 2011 Mar 4.
Microproteomics: quantitative proteomic profiling of small numbers of laser-captured cells. Roulahc PL, Ward JM, Thompson JW, Soderblom EJ, Silva M, Moseley MA 3rd, Jarvis ED. Cold Spring Harb Protoc. 2011 Feb 1.
Proteomic Profiling of a Layered Tissue Reveals Unique Glycolytic Specializations of Photoreceptor Cells. Reidel B, Thompson JW, Farsiu S, Moseley MA, Skiba NP, Arshavsky VY. Mol Cell Proteomics. 2010 Dec 20.
Site-specific analysis of protein S-acylation by resin-assisted capture (Acyl-RAC). Forrester MT, Hess DT, Thompson JW, Hultman RC, Moseley MA, Stamler JS, Casey PJ. J Lipid Res. 2010 Epub Nov 2.
Identification of s-nitrosylated targets of thioredoxin using a quantitative proteomic approach. Benhar M, Thompson JW, Moseley MA, Stamler JS. Biochemistry. 2010 Aug 17; 49(30): 6963-9.
Survival defects of Cryptococcus neoformans mutants in human cerebrospinal fluid results in attenuated virulence in an experimental mode of meningitis. Lee A, Toffaletti DL, Tenor J, Soderblom EJ, Thompson JW, Moseley MA, Price M, Perfect JR. Infect Immun. 2010 Epub Aug 9.
Kinetic characterization of Salmonella FliK-FlhB interactions demonstrates complexity of the Type III secretion substrate-specificity switch. Morris DP, Roush ED, Thompson JW, Moseley MA, Murphy JW, McMurry JL. Biochemistry. 2010 Aug 3; 49(30): 6386-93.
Mass spectrometry-based thermal shift assay for protein-ligand binding analysis. West GM, Thompson JW, Soderblom EJ, Dubois LG, Dearmond PD, Moseley MA, Fitzgerald MC. Anal Chem. 2010 Jul 1; 82(13): 5573-81.
Resistance to ErbB2 tyrosine kinase inhibitors in breast cancer is mediated by calcium-dependent activation of RelA. Xia W, Bacus S, Husain I, Liu L, Zhao S, Liu Z, Moseley MA 3rd, Thompson JW, Chen FL, Koch KM, Spector NL. Mol Cancer Ther. 2010 Feb; 9(2): 292-9.
Restraint of apoptosis during mitosis through interdomain phosphorylation of caspase-2. Andersen JL, Johnson CE, Freel CD, Parrish AB, Day JL, Buchakjian MR, Nutt LK, Thompson JW, Moseley MA, Kornbluth S. EMBO J. 2009 Oct 21; 28(20): 3216-27.
Proteomic analysis of S-nitrosylation and denitrosylation by resin-assisted capture.Forrester MT, Thompson JW, Foster MW, Nogueira L, Moseley MA, Stamler JS. Nat Biotechnol. 2009 Jun; 27(6): 557-9.
Publications with Core Facility Contribution
Comparing human pancreatic cell secretomes by in vitro aptamer selection identifies cyclophilin B as a candidate pancreatic cancer biomarker. Ray P, Rialon-Guevara KL, Veras E, Sullenger BA, White RR. J Clin Invest. 2012 Apr 9 (EPub ahead of print).
Identification of potential prognostic biomarkers in patients with untreated, advanced pancreatic cancer from a phase 3 trial (Cancer and Leukemia Group B 80303). Roberts AS, Campa MJ, Gottlin EB, Jiang C, Owzar K, Kindler HL, Venook AP, Goldberg RM, O'Reilly EM, Patz EF Jr. Cancer. 2012 Jan 15;118(2):571-8.
Phosphorylation of eukaryotic translation initiation factor 4G1 (eIF4G1) by protein kinase C{alpha} regulates eIF4G1 binding to Mnk1. Dobrikov M, Dobrikova E, Shveygert M, Gromeier M. Mol Cell Biol. 2011 Jul; 31(14): 2947-50. Epub 2011 May 16.
Phosphorylation
of G protein-coupled receptor kinase 1 (GRK1) is regulated by light but
independent of phototransduction in rod photoreceptors. Osawa S, Jo R, Xiong Y, Reidel B, Tserentsoodol N, Arshavsky VY, Iuvone PM, Weiss ER. J Biol Chem. 2011 Jun 10;286(23):20923-9. Epub 2011 Apr 19. A protein microarray-based analysis of S-nitrosylation. Foster MW, Forrester MT, Stamler JS. Proc Natl Acad Sci U S A. 2009 Nov 10; 106(45): 18948-53.
Modulation of heat shock transcription factor 1 as a therapeutic target for small molecule intervention in neurodegenerative disease. Neef DW, Turski ML, Thiele DJ. PLoS Biol. 2010 Jan 19;8(1):e1000291. In situ growth of a PEG-like polymer from the C terminus of an intein fusion protein improves pharmacokinetics and tumor accumulation. Gao W, Liu W, Christensen T, Zalutsky MR, Chilkoti A. Proc Natl Acad Sci USA. 2010 Sep 1. In situ growth of a stoichiometric PEG-like conjugate at a protein's N-terminus with significantly improved pharmacokinetics. Gao W, Liu W, Mackay JA, Zalutsky MR, Toone EJ, Chilkoti A. Proc Natl Acad Sci USA. 2009 Sept 8; 106(36): 15231-6.
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